Karl Marquez

Scientist 3, Cell Therapy R&D · CAR-T · Data Analysis in R

Summary

Cell therapy scientist with 15 years in biotech and academic core labs, taking CAR-T and NK-cell programs from discovery through IND. Focused on donor-driven CAR-T biology, pairing functional assays, single-cell cytokine profiling and in vivo work with R-based analysis and dashboards. Co-inventor on two granted US patents.

Experience

Genentech (Poseida Therapeutics, acquired January 2025)
2019–Present
Scientist 3 2025–Present
  • Built a team-wide dashboard correlating donor characteristics with CAR-T production, in vitro and in vivo tumor-control data, making cross-study trends visible to anyone.
  • Developed a serial restimulation assay measuring CAR-T killing and persistence under repeated tumor challenge.
  • Profile single-cell cytokine responses of antigen-activated CAR-T cells and analyze them in R to link donor biology to product quality.
  • Contributed to TASR immune cloaking, shielding allogeneic CAR-T cells from host NK killing to extend persistence.
  • Improve post-thaw viability of CAR-T products, including antioxidant supplementation during manufacturing.
Research Scientist · Associate Scientist · Senior Research Associate · Research Associate 2019–2025
  • Engineered and gene-edited T cells for CAR-T discovery and platform development, contributing to IND submissions for multiple programs, including anti-BCMA and anti-MUC1.
  • Advanced the Healthy Donor Program for allogeneic CAR-T using cell separation, in vitro and in vivo characterization, and correlation and statistical analysis.
ImmunityBio (formerly NantKwest)
2017–2019
  • Developed and optimized NK-cell isolation from PBMC and cord blood, scaling from bench to GMP-grade bioreactors.
  • Demonstrated NK cytotoxicity across target cell lines and safety across healthy donors; work led to two granted patents.
Intrexon Corp.
2014–2017
  • Optimized exosome purification from bovine milk and cell supernatant (ultracentrifugation, size-exclusion chromatography) and ran high-throughput bioactivity screens in human fibroblasts.
Stem Cell Core Facility, UC San Diego
2011–2014
  • Ran and maintained flow cytometers and sorters for campus labs, purifying cell subsets from human, mouse and plant samples; supplied pluripotent hESC lines to UCSD researchers.

Skills

Cell therapy
CAR-T and NK-cell engineering, gene editing (Cas-CLOVER), T/NK isolation, GMP-scale bioreactors, lab management
Assays
Multicolor flow cytometry and sorting, serial restimulation and cytotoxicity assays, single-cell cytokine profiling, in vivo xenograft models
Data
R (tidyverse, ggplot2, Shiny, pharmaverse), Python, statistics, data visualization, HTML/CSS/JS

Publications & Patents

Selected Projects

Clinical Reporting (CDISC with pharmaverse in R) · COVID-19 Dashboard (R Shiny) · Vaccine Locator (R Shiny map of flu and COVID-19 shot sites)

Education

B.S., Molecular Biology
University of California, San Diego